J3_5HAU_028

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5HAU|1|2a|U|849, 5HAU|1|2a|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_028 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0707

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5HAU|1|2a|C|810
5HAU|1|2a|U|811
5HAU|1|2a|A|812
5HAU|1|2a|G|813
*
5HAU|1|2a|C|835
5HAU|1|2a|G|836
5HAU|1|2a|A|837
5HAU|1|2a|A|838
5HAU|1|2a|G|839
*
5HAU|1|2a|C|846
5HAU|1|2a|G|847
5HAU|1|2a|U|848
5HAU|1|2a|U|849
5HAU|1|2a|A|850
5HAU|1|2a|A|851
5HAU|1|2a|G|852

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8