J3_5HAU_064

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

5HAU|1|2A|G|2842, 5HAU|1|2A|A|2844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_064 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.1736

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5HAU|1|2A|C|2823
5HAU|1|2A|C|2824
*
5HAU|1|2A|G|2840
5HAU|1|2A|U|2841
5HAU|1|2A|G|2842
5HAU|1|2A|G|2843
5HAU|1|2A|A|2844
5HAU|1|2A|U|2845
*
5HAU|1|2A|A|2891
5HAU|1|2A|A|2892
5HAU|1|2A|U|2893
5HAU|1|2A|C|2894
5HAU|1|2A|G|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2P

50S ribosomal protein L17