J3_5HAU_071

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5HAU|1|2a|C|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_071 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1651

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5HAU|1|2a|C|968
5HAU|1|2a|U|969
5HAU|1|2a|U|970
5HAU|1|2a|G|971
5HAU|1|2a|A|972
5HAU|1|2a|C|973
5HAU|1|2a|A|974
5HAU|1|2a|U|975
*
5HAU|1|2a|A|1027
5HAU|1|2a|C|1028
5HAU|1|2a|A|1029
5HAU|1|2a|G|1030
*
5HAU|1|2a|C|1192
5HAU|1|2a|U|1193
5HAU|1|2a|U|1194
5HAU|1|2a|A|1195
5HAU|1|2a|C|1196
5HAU|1|2a|G|1197

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z