J3_5HCP_009
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5HCP|1|1a|U|849, 5HCP|1|1a|A|851
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCP_009 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0665
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
5HCP|1|1a|C|810
5HCP|1|1a|U|811
5HCP|1|1a|A|812
5HCP|1|1a|G|813
*
5HCP|1|1a|C|835
5HCP|1|1a|G|836
5HCP|1|1a|A|837
5HCP|1|1a|A|838
5HCP|1|1a|G|839
*
5HCP|1|1a|C|846
5HCP|1|1a|G|847
5HCP|1|1a|U|848
5HCP|1|1a|U|849
5HCP|1|1a|A|850
5HCP|1|1a|A|851
5HCP|1|1a|G|852
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1h
- 30S ribosomal protein S8
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