J3_5HCP_053
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5HCP|1|2A|U|473, 5HCP|1|2A|C|481
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCP_053 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.063
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5HCP|1|2A|C|31
5HCP|1|2A|U|32
5HCP|1|2A|C|33
5HCP|1|2A|G|34
*
5HCP|1|2A|C|470
5HCP|1|2A|G|471
5HCP|1|2A|A|472
5HCP|1|2A|U|473
5HCP|1|2A|A|474
5HCP|1|2A|G|475
5HCP|1|2A|C|476
5HCP|1|2A|G|477
5HCP|1|2A|C|478
5HCP|1|2A|A|479
5HCP|1|2A|C|480
5HCP|1|2A|C|481
5HCP|1|2A|A|482
5HCP|1|2A|G|483
5HCP|1|2A|U|484
5HCP|1|2A|A|485
5HCP|1|2A|C|486
*
5HCP|1|2A|G|493
5HCP|1|2A|G|494
5HCP|1|2A|A|495
5HCP|1|2A|A|496
5HCP|1|2A|A|497
5HCP|1|2A|G|498
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 27
- 50S ribosomal protein L34
- Chain 2F
- 50S ribosomal protein L4
- Chain 2U
- 50S ribosomal protein L20
- Chain 2X
- 50S ribosomal protein L23
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