J3_5HCR_010
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCR_010 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0701
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
5HCR|1|1a|C|914
5HCR|1|1a|A|915
5HCR|1|1a|A|916
5HCR|1|1a|G|917
*
5HCR|1|1a|C|1326
5HCR|1|1a|U|1327
5HCR|1|1a|A|1328
5HCR|1|1a|G|1329
5HCR|1|1a|U|1330
5HCR|1|1a|A|1331
5HCR|1|1a|A|1332
*
5HCR|1|1a|U|1355
5HCR|1|1a|G|1356
5HCR|1|1a|A|1357
5HCR|1|1a|A|1358
5HCR|1|1a|U|1359
5HCR|1|1a|A|1360
5HCR|1|1a|C|1361
5HCR|1|1a|G|1362
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
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