J3_5HCR_017

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5HCR|1|2A|G|732, 5HCR|1|2A|G|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCR_017 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0511

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5HCR|1|2A|C|729
5HCR|1|2A|G|730
5HCR|1|2A|A|731
5HCR|1|2A|G|732
5HCR|1|2A|C|733
5HCR|1|2A|U|734
5HCR|1|2A|A|735
*
5HCR|1|2A|U|819
5HCR|1|2A|A|820
5HCR|1|2A|G|821
*
5HCR|1|2A|C|837
5HCR|1|2A|G|838
5HCR|1|2A|A|839
5HCR|1|2A|G|840

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2