J3_5HCR_023
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 5HCR|1|2A|G|2345
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCR_023 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.0929
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5HCR|1|2A|C|2306
5HCR|1|2A|U|2307
5HCR|1|2A|C|2308
*
5HCR|1|2A|G|2332
5HCR|1|2A|A|2333
5HCR|1|2A|G|2334
*
5HCR|1|2A|U|2343
5HCR|1|2A|A|2344
5HCR|1|2A|G|2345
5HCR|1|2A|A|2346
5HCR|1|2A|A|2347
5HCR|1|2A|G|2348
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2G
- 50S ribosomal protein L5
- Chain 2S
- 50S ribosomal protein L18
- Chain 2x
- Transfer RNA; tRNA
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