J3_5HCR_031

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

5HCR|1|2a|A|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCR_031 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.156

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5HCR|1|2a|C|1099
5HCR|1|2a|G|1100
5HCR|1|2a|C|1101
*
5HCR|1|2a|G|1138
5HCR|1|2a|G|1139
5HCR|1|2a|A|1140
5HCR|1|2a|C|1141
5HCR|1|2a|U|1142
5HCR|1|2a|G|1143
5HCR|1|2a|C|1144
*
5HCR|1|2a|G|1157
5HCR|1|2a|A|1158
5HCR|1|2a|G|1159
5HCR|1|2a|G|1160
5HCR|1|2a|A|1161
5HCR|1|2a|A|1162
5HCR|1|2a|G|1163
5HCR|1|2a|G|1164
5HCR|1|2a|A|1165
5HCR|1|2a|G|1166

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z