J3_5HCR_035
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5HCR|1|1A|U|473, 5HCR|1|1A|C|481
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCR_035 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0513
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5HCR|1|1A|C|31
5HCR|1|1A|U|32
5HCR|1|1A|C|33
5HCR|1|1A|G|34
*
5HCR|1|1A|C|470
5HCR|1|1A|G|471
5HCR|1|1A|A|472
5HCR|1|1A|U|473
5HCR|1|1A|A|474
5HCR|1|1A|G|475
5HCR|1|1A|C|476
5HCR|1|1A|G|477
5HCR|1|1A|C|478
5HCR|1|1A|A|479
5HCR|1|1A|C|480
5HCR|1|1A|C|481
5HCR|1|1A|A|482
5HCR|1|1A|G|483
5HCR|1|1A|U|484
5HCR|1|1A|A|485
5HCR|1|1A|C|486
*
5HCR|1|1A|G|493
5HCR|1|1A|G|494
5HCR|1|1A|A|495
5HCR|1|1A|A|496
5HCR|1|1A|A|497
5HCR|1|1A|G|498
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1F
- 50S ribosomal protein L4
- Chain 1U
- 50S ribosomal protein L20
- Chain 1X
- 50S ribosomal protein L23
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