J3_5HCR_045
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5HCR|1|1a|C|49, 5HCR|1|1a|A|51, 5HCR|1|1a|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCR_045 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0967
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5HCR|1|1a|G|47
5HCR|1|1a|C|48
5HCR|1|1a|C|49
5HCR|1|1a|U|50
5HCR|1|1a|A|51
5HCR|1|1a|A|52
5HCR|1|1a|G|53
*
5HCR|1|1a|U|355
5HCR|1|1a|A|356
5HCR|1|1a|G|357
5HCR|1|1a|G|358
5HCR|1|1a|A|359
5HCR|1|1a|A|360
5HCR|1|1a|U|361
5HCR|1|1a|C|362
5HCR|1|1a|U|363
*
5HCR|1|1a|A|389
5HCR|1|1a|G|390
5HCR|1|1a|C|391
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1p
- 30S ribosomal protein S16
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