J3_5HCR_049

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCR_049 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1719

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

5HCR|1|1a|C|968
5HCR|1|1a|U|969
5HCR|1|1a|U|970
5HCR|1|1a|G|971
5HCR|1|1a|A|972
5HCR|1|1a|C|973
5HCR|1|1a|A|974
5HCR|1|1a|U|975
*
5HCR|1|1a|A|1027
5HCR|1|1a|C|1028
5HCR|1|1a|A|1029
5HCR|1|1a|G|1030
*
5HCR|1|1a|C|1192
5HCR|1|1a|U|1193
5HCR|1|1a|U|1194
5HCR|1|1a|A|1195
5HCR|1|1a|C|1196
5HCR|1|1a|G|1197

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z