J3_5HCR_055

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

5HCR|1|2A|U|287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCR_055 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.0987

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5HCR|1|2A|U|257
5HCR|1|2A|A|258
5HCR|1|2A|A|259
5HCR|1|2A|A|260
5HCR|1|2A|C|261
*
5HCR|1|2A|G|281
5HCR|1|2A|G|282
5HCR|1|2A|G|283
5HCR|1|2A|U|284
5HCR|1|2A|C|285
5HCR|1|2A|G|286
5HCR|1|2A|U|287
5HCR|1|2A|G|288
*
5HCR|1|2A|C|395
5HCR|1|2A|G|396

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2I

50S ribosomal protein L9