J3_5HD1_036
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5HD1|1|1A|U|287
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HD1_036 not in the Motif Atlas
- Homologous match to J3_4WF9_022
- Geometric discrepancy: 0.1699
- The information below is about J3_4WF9_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5HD1|1|1A|U|257
5HD1|1|1A|A|258
5HD1|1|1A|A|259
5HD1|1|1A|A|260
5HD1|1|1A|C|261
*
5HD1|1|1A|G|281
5HD1|1|1A|G|282
5HD1|1|1A|G|283
5HD1|1|1A|U|284
5HD1|1|1A|C|285
5HD1|1|1A|G|286
5HD1|1|1A|U|287
5HD1|1|1A|G|288
*
5HD1|1|1A|C|395
5HD1|1|1A|G|396
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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