J3_5HKV_003

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5HKV|1|X|U|731, 5HKV|1|X|G|837, 5HKV|1|X|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HKV_003 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.0656

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

5HKV|1|X|U|728
5HKV|1|X|G|729
5HKV|1|X|A|730
5HKV|1|X|U|731
5HKV|1|X|C|732
5HKV|1|X|U|733
5HKV|1|X|A|734
*
5HKV|1|X|U|818
5HKV|1|X|A|819
5HKV|1|X|G|820
*
5HKV|1|X|C|836
5HKV|1|X|G|837
5HKV|1|X|A|838
5HKV|1|X|A|839

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2