J3_5HKV_014
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5HKV|1|X|U|494, 5HKV|1|X|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HKV_014 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.0719
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5HKV|1|X|C|32
5HKV|1|X|U|33
5HKV|1|X|U|34
5HKV|1|X|G|35
*
5HKV|1|X|C|491
5HKV|1|X|G|492
5HKV|1|X|A|493
5HKV|1|X|U|494
5HKV|1|X|A|495
5HKV|1|X|G|496
5HKV|1|X|U|497
5HKV|1|X|G|498
5HKV|1|X|A|499
5HKV|1|X|A|500
5HKV|1|X|C|501
5HKV|1|X|C|502
5HKV|1|X|A|503
5HKV|1|X|G|504
5HKV|1|X|U|505
5HKV|1|X|A|506
5HKV|1|X|C|507
*
5HKV|1|X|G|514
5HKV|1|X|G|515
5HKV|1|X|A|516
5HKV|1|X|A|517
5HKV|1|X|A|518
5HKV|1|X|G|519
Current chains
- Chain X
- 23s ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L23
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