J3_5HL7_015

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAUAGAACC

Length

28 nucleotides

Bulged bases

5HL7|1|X|U|549, 5HL7|1|X|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HL7_015 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.0464

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

5HL7|1|X|G|30
5HL7|1|X|C|31
*
5HL7|1|X|G|520
5HL7|1|X|U|521
5HL7|1|X|G|522
5HL7|1|X|A|523
5HL7|1|X|A|524
5HL7|1|X|A|525
5HL7|1|X|A|526
5HL7|1|X|G|527
5HL7|1|X|C|528
5HL7|1|X|A|529
5HL7|1|X|C|530
*
5HL7|1|X|G|541
5HL7|1|X|A|542
5HL7|1|X|G|543
5HL7|1|X|U|544
5HL7|1|X|G|545
5HL7|1|X|A|546
5HL7|1|X|A|547
5HL7|1|X|A|548
5HL7|1|X|U|549
5HL7|1|X|A|550
5HL7|1|X|G|551
5HL7|1|X|A|552
5HL7|1|X|A|553
5HL7|1|X|C|554
5HL7|1|X|C|555

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24