3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAA*UGAUAAC*GUC
Length
14 nucleotides
Bulged bases
5I4L|1|1|U|1840, 5I4L|1|1|A|1841
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_008 not in the Motif Atlas
Homologous match to J3_5TBW_009
Geometric discrepancy: 0.0557
The information below is about J3_5TBW_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_74051.1
Basepair signature
cWW-tSH-tWW-tHW-F-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

5I4L|1|1|G|1488
5I4L|1|1|A|1489
5I4L|1|1|A|1490
5I4L|1|1|A|1491
*
5I4L|1|1|U|1837
5I4L|1|1|G|1838
5I4L|1|1|A|1839
5I4L|1|1|U|1840
5I4L|1|1|A|1841
5I4L|1|1|A|1842
5I4L|1|1|C|1843
*
5I4L|1|1|G|1852
5I4L|1|1|U|1853
5I4L|1|1|C|1854

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain O4
60S ribosomal protein L34-A
Chain O7
60S ribosomal protein L37-A
Chain O9
60S ribosomal protein L39

Coloring options:


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