J3_5I4L_020

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5I4L_020 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1041

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5I4L|1|2|C|1161
5I4L|1|2|C|1162
5I4L|1|2|A|1163
5I4L|1|2|G|1164
*
5I4L|1|2|C|1581
5I4L|1|2|U|1582
5I4L|1|2|A|1583
5I4L|1|2|G|1584
5I4L|1|2|U|1585
5I4L|1|2|A|1586
5I4L|1|2|A|1587
*
5I4L|1|2|U|1609
5I4L|1|2|G|1610
5I4L|1|2|A|1611
5I4L|1|2|U|1612
5I4L|1|2|U|1613
5I4L|1|2|A|1614
5I4L|1|2|C|1615
5I4L|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D8

40S ribosomal protein S28-A

Chain S5

40S ribosomal protein S5