3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUC*GAA*UAAAAG
Length
12 nucleotides
Bulged bases
5I4L|1|5|A|2703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_042 not in the Motif Atlas
Homologous match to J3_5TBW_013
Geometric discrepancy: 0.0637
The information below is about J3_5TBW_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

5I4L|1|5|C|2664
5I4L|1|5|U|2665
5I4L|1|5|C|2666
*
5I4L|1|5|G|2690
5I4L|1|5|A|2691
5I4L|1|5|A|2692
*
5I4L|1|5|U|2701
5I4L|1|5|A|2702
5I4L|1|5|A|2703
5I4L|1|5|A|2704
5I4L|1|5|A|2705
5I4L|1|5|G|2706

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain l5
60S ribosomal protein L5
Chain m1
60S ribosomal protein L11-B
Chain n1
60S ribosomal protein L21-A
Chain sM
Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1

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