J3_5I4L_092
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUGU*ACUCUUUG*CAU
- Length
- 28 nucleotides
- Bulged bases
- 5I4L|1|6|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5I4L_092 not in the Motif Atlas
- Homologous match to J3_8P9A_070
- Geometric discrepancy: 0.1751
- The information below is about J3_8P9A_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69466.1
- Basepair signature
- cWW-tSH-F-cWW-F-F-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5I4L|1|6|A|213
5I4L|1|6|G|214
5I4L|1|6|A|215
5I4L|1|6|U|216
5I4L|1|6|A|217
5I4L|1|6|A|218
5I4L|1|6|A|219
5I4L|1|6|A|220
5I4L|1|6|A|221
5I4L|1|6|A|222
5I4L|1|6|U|223
5I4L|1|6|C|224
5I4L|1|6|A|225
5I4L|1|6|A|226
5I4L|1|6|U|227
5I4L|1|6|G|228
5I4L|1|6|U|229
*
5I4L|1|6|A|236
5I4L|1|6|C|237
5I4L|1|6|U|238
5I4L|1|6|C|239
5I4L|1|6|U|240
5I4L|1|6|U|241
5I4L|1|6|U|242
5I4L|1|6|G|243
*
5I4L|1|6|C|250
5I4L|1|6|A|251
5I4L|1|6|U|252
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8-A
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