J3_5IB7_067

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5IB7|1|1H|C|34, 5IB7|1|1H|U|448, 5IB7|1|1H|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB7_067 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.2447

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

5IB7|1|1H|C|32
5IB7|1|1H|U|33
5IB7|1|1H|C|34
5IB7|1|1H|G|35
*
5IB7|1|1H|C|445
5IB7|1|1H|G|446
5IB7|1|1H|A|447
5IB7|1|1H|U|448
5IB7|1|1H|A|449
5IB7|1|1H|G|450
5IB7|1|1H|C|451
5IB7|1|1H|G|452
5IB7|1|1H|C|453
5IB7|1|1H|A|454
5IB7|1|1H|C|455
5IB7|1|1H|C|456
5IB7|1|1H|A|457
5IB7|1|1H|G|458
5IB7|1|1H|U|459
5IB7|1|1H|A|460
5IB7|1|1H|C|461
*
5IB7|1|1H|G|468
5IB7|1|1H|G|469
5IB7|1|1H|A|470
5IB7|1|1H|A|471
5IB7|1|1H|A|472
5IB7|1|1H|G|473

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain C8

50S ribosomal protein L20

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34