J3_5IB8_004

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5IB8|1|13|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB8_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.08

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5IB8|1|13|C|826
5IB8|1|13|U|827
5IB8|1|13|A|828
5IB8|1|13|G|829
*
5IB8|1|13|C|857
5IB8|1|13|G|858
5IB8|1|13|A|859
5IB8|1|13|A|860
5IB8|1|13|G|861
*
5IB8|1|13|C|868
5IB8|1|13|G|869
5IB8|1|13|U|870
5IB8|1|13|U|871
5IB8|1|13|A|872
5IB8|1|13|A|873
5IB8|1|13|G|874

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1E

30S ribosomal protein S2

Chain 7E

30S ribosomal protein S8