J3_5IB8_055

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5IB8|1|13|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB8_055 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1392

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5IB8|1|13|C|990
5IB8|1|13|U|991
5IB8|1|13|U|992
5IB8|1|13|G|993
5IB8|1|13|A|994
5IB8|1|13|C|995
5IB8|1|13|A|996
5IB8|1|13|U|997
*
5IB8|1|13|A|1044
5IB8|1|13|C|1045
5IB8|1|13|A|1046
5IB8|1|13|G|1047
*
5IB8|1|13|C|1210
5IB8|1|13|U|1211
5IB8|1|13|U|1212
5IB8|1|13|A|1213
5IB8|1|13|C|1214
5IB8|1|13|G|1215

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 5I

30S ribosomal protein S14 type Z