J3_5IBB_038

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5IBB|1|1G|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IBB_038 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1334

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5IBB|1|1G|C|1237
5IBB|1|1G|A|1238
5IBB|1|1G|A|1239
5IBB|1|1G|U|1240
5IBB|1|1G|G|1241
*
5IBB|1|1G|C|1296
5IBB|1|1G|C|1297
5IBB|1|1G|C|1298
5IBB|1|1G|A|1299
5IBB|1|1G|G|1300
5IBB|1|1G|U|1301
5IBB|1|1G|U|1302
5IBB|1|1G|C|1303
*
5IBB|1|1G|G|1334
5IBB|1|1G|C|1335
5IBB|1|1G|C|1336
5IBB|1|1G|G|1337

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1B

30S ribosomal protein Thx

Chain 4A

30S ribosomal protein S13

Chain 62

30S ribosomal protein S7