J3_5IBB_065
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 5IBB|1|1H|U|504, 5IBB|1|1H|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IBB_065 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.064
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5IBB|1|1H|G|30
5IBB|1|1H|C|31
*
5IBB|1|1H|G|474
5IBB|1|1H|U|475
5IBB|1|1H|G|476
5IBB|1|1H|A|477
5IBB|1|1H|A|478
5IBB|1|1H|A|479
5IBB|1|1H|A|480
5IBB|1|1H|G|481
5IBB|1|1H|A|482
5IBB|1|1H|A|483
5IBB|1|1H|C|484
*
5IBB|1|1H|G|496
5IBB|1|1H|A|497
5IBB|1|1H|G|498
5IBB|1|1H|U|499
5IBB|1|1H|G|500
5IBB|1|1H|A|501
5IBB|1|1H|A|502
5IBB|1|1H|A|503
5IBB|1|1H|U|504
5IBB|1|1H|A|505
5IBB|1|1H|G|506
5IBB|1|1H|A|507
5IBB|1|1H|G|508
5IBB|1|1H|C|509
5IBB|1|1H|C|510
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain C8
- 50S ribosomal protein L20
- Chain E8
- 50S ribosomal protein L22
- Chain G8
- 50S ribosomal protein L24
Coloring options: