J3_5IMQ_019
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUC*GUUG*CAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IMQ_019 not in the Motif Atlas
- Geometric match to J3_4V9F_009
- Geometric discrepancy: 0.2405
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IMQ|1|D|C|2517
5IMQ|1|D|A|2518
5IMQ|1|D|U|2519
5IMQ|1|D|C|2520
*
5IMQ|1|D|G|2545
5IMQ|1|D|U|2546
5IMQ|1|D|U|2547
5IMQ|1|D|G|2548
*
5IMQ|1|D|C|2560
5IMQ|1|D|A|2561
5IMQ|1|D|U|2562
5IMQ|1|D|U|2563
5IMQ|1|D|A|2564
5IMQ|1|D|A|2565
5IMQ|1|D|A|2566
5IMQ|1|D|G|2567
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L36
- Chain B
- Elongation factor 4
- Chain f
- 50S ribosomal protein L13
- Chain g
- 50S ribosomal protein L14
Coloring options: