J3_5IMR_011

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IMR_011 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.2695

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5IMR|1|D|C|698
5IMR|1|D|A|699
5IMR|1|D|G|700
*
5IMR|1|D|C|732
5IMR|1|D|G|733
5IMR|1|D|A|734
5IMR|1|D|A|735
5IMR|1|D|C|736
*
5IMR|1|D|G|760
5IMR|1|D|A|761
5IMR|1|D|U|762
5IMR|1|D|G|763

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2