J3_5IMR_016

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5IMR|1|D|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IMR_016 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.309

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5IMR|1|D|C|2517
5IMR|1|D|A|2518
5IMR|1|D|U|2519
5IMR|1|D|C|2520
*
5IMR|1|D|G|2545
5IMR|1|D|U|2546
5IMR|1|D|U|2547
*
5IMR|1|D|A|2561
5IMR|1|D|U|2562
5IMR|1|D|U|2563
5IMR|1|D|A|2564
5IMR|1|D|A|2565
5IMR|1|D|A|2566
5IMR|1|D|G|2567

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain f

50S ribosomal protein L13

Chain g

50S ribosomal protein L14