J3_5IQR_004

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_004 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.102

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5IQR|1|1|C|1298
5IQR|1|1|G|1299
5IQR|1|1|G|1300
5IQR|1|1|A|1301
5IQR|1|1|A|1302
5IQR|1|1|G|1303
*
5IQR|1|1|C|1625
5IQR|1|1|A|1626
5IQR|1|1|G|1627
*
5IQR|1|1|C|1639
5IQR|1|1|A|1640
5IQR|1|1|A|1641
5IQR|1|1|G|1642

Current chains

Chain 1

LSU rRNA

Nearby chains