J3_5IQR_010

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5IQR|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0949

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5IQR|1|2|C|826
5IQR|1|2|U|827
5IQR|1|2|U|828
5IQR|1|2|G|829
*
5IQR|1|2|C|857
5IQR|1|2|G|858
5IQR|1|2|G|859
5IQR|1|2|A|860
5IQR|1|2|G|861
*
5IQR|1|2|C|868
5IQR|1|2|G|869
5IQR|1|2|U|870
5IQR|1|2|U|871
5IQR|1|2|A|872
5IQR|1|2|A|873
5IQR|1|2|G|874

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21