J3_5IQR_017

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5IQR|1|2|U|1240, 5IQR|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_017 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1021

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5IQR|1|2|C|1237
5IQR|1|2|A|1238
5IQR|1|2|A|1239
5IQR|1|2|U|1240
5IQR|1|2|G|1241
*
5IQR|1|2|C|1296
5IQR|1|2|G|1297
5IQR|1|2|U|1298
5IQR|1|2|A|1299
5IQR|1|2|G|1300
5IQR|1|2|U|1301
5IQR|1|2|C|1302
5IQR|1|2|C|1303
*
5IQR|1|2|G|1334
5IQR|1|2|U|1335
5IQR|1|2|C|1336
5IQR|1|2|G|1337

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13