J3_5IQR_025

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_025 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0769

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5IQR|1|1|G|1424
5IQR|1|1|G|1425
5IQR|1|1|G|1426
5IQR|1|1|A|1427
5IQR|1|1|C|1428
5IQR|1|1|G|1429
*
5IQR|1|1|C|1564
5IQR|1|1|C|1565
*
5IQR|1|1|G|1568
5IQR|1|1|A|1569
5IQR|1|1|A|1570
5IQR|1|1|A|1571
5IQR|1|1|A|1572
5IQR|1|1|G|1573
5IQR|1|1|C|1574

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain B

50S ribosomal protein L2