J3_5IQR_029

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5IQR|1|2|C|48, 5IQR|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_029 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0906

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5IQR|1|2|G|46
5IQR|1|2|C|47
5IQR|1|2|C|48
5IQR|1|2|U|49
5IQR|1|2|A|50
5IQR|1|2|A|51
5IQR|1|2|C|52
*
5IQR|1|2|G|359
5IQR|1|2|G|360
5IQR|1|2|G|361
5IQR|1|2|G|362
5IQR|1|2|A|363
5IQR|1|2|A|364
5IQR|1|2|U|365
5IQR|1|2|A|366
5IQR|1|2|U|367
*
5IQR|1|2|A|393
5IQR|1|2|G|394
5IQR|1|2|C|395

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain 8

GTP pyrophosphokinase

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16