J3_5IT8_025

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5IT8|1|CA|U|686, 5IT8|1|CA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_025 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3336

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5IT8|1|CA|U|683
5IT8|1|CA|G|684
5IT8|1|CA|A|685
5IT8|1|CA|U|686
5IT8|1|CA|C|687
5IT8|1|CA|U|688
5IT8|1|CA|A|689
*
5IT8|1|CA|U|773
5IT8|1|CA|G|774
5IT8|1|CA|G|775
*
5IT8|1|CA|C|791
5IT8|1|CA|A|792
5IT8|1|CA|A|793
5IT8|1|CA|A|794

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2