J3_5IT8_029

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5IT8|1|CA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_029 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.072

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5IT8|1|CA|C|1306
5IT8|1|CA|A|1307
5IT8|1|CA|A|1308
5IT8|1|CA|G|1309
*
5IT8|1|CA|C|1605
5IT8|1|CA|C|1606
5IT8|1|CA|C|1607
5IT8|1|CA|A|1608
5IT8|1|CA|A|1609
5IT8|1|CA|A|1610
5IT8|1|CA|C|1611
*
5IT8|1|CA|G|1620
5IT8|1|CA|U|1621
5IT8|1|CA|G|1622

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34