J3_5IT8_031

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_031 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0603

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5IT8|1|CA|C|2091
5IT8|1|CA|U|2092
5IT8|1|CA|G|2093
*
5IT8|1|CA|C|2196
5IT8|1|CA|U|2197
5IT8|1|CA|A|2198
5IT8|1|CA|A|2199
5IT8|1|CA|C|2200
*
5IT8|1|CA|G|2223
5IT8|1|CA|G|2224
5IT8|1|CA|A|2225
5IT8|1|CA|C|2226
5IT8|1|CA|A|2227
5IT8|1|CA|G|2228

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28