J3_5IT8_058

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_058 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0336

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5IT8|1|BA|C|936
5IT8|1|BA|A|937
5IT8|1|BA|A|938
5IT8|1|BA|G|939
*
5IT8|1|BA|C|1344
5IT8|1|BA|U|1345
5IT8|1|BA|A|1346
5IT8|1|BA|G|1347
5IT8|1|BA|U|1348
5IT8|1|BA|A|1349
5IT8|1|BA|A|1350
*
5IT8|1|BA|U|1372
5IT8|1|BA|G|1373
5IT8|1|BA|A|1374
5IT8|1|BA|A|1375
5IT8|1|BA|U|1376
5IT8|1|BA|A|1377
5IT8|1|BA|C|1378
5IT8|1|BA|G|1379

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9