J3_5IT8_065

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5IT8|1|DA|A|504, 5IT8|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_065 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0337

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5IT8|1|DA|G|30
5IT8|1|DA|C|31
*
5IT8|1|DA|G|474
5IT8|1|DA|C|475
5IT8|1|DA|G|476
5IT8|1|DA|A|477
5IT8|1|DA|A|478
5IT8|1|DA|A|479
5IT8|1|DA|A|480
5IT8|1|DA|G|481
5IT8|1|DA|A|482
5IT8|1|DA|A|483
5IT8|1|DA|C|484
*
5IT8|1|DA|G|496
5IT8|1|DA|A|497
5IT8|1|DA|G|498
5IT8|1|DA|U|499
5IT8|1|DA|G|500
5IT8|1|DA|A|501
5IT8|1|DA|A|502
5IT8|1|DA|A|503
5IT8|1|DA|A|504
5IT8|1|DA|A|505
5IT8|1|DA|G|506
5IT8|1|DA|A|507
5IT8|1|DA|A|508
5IT8|1|DA|C|509
5IT8|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DR

50S ribosomal protein L20

Chain DT

50S ribosomal protein L22

Chain DV

50S ribosomal protein L24