3D structure

PDB id
5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution structure of the Escherichia coli ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.12 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
5IT8|1|DA|U|34, 5IT8|1|DA|U|448, 5IT8|1|DA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5IT8_066 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0369
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

5IT8|1|DA|C|32
5IT8|1|DA|C|33
5IT8|1|DA|U|34
5IT8|1|DA|G|35
*
5IT8|1|DA|C|445
5IT8|1|DA|G|446
5IT8|1|DA|A|447
5IT8|1|DA|U|448
5IT8|1|DA|A|449
5IT8|1|DA|G|450
5IT8|1|DA|U|451
5IT8|1|DA|G|452
5IT8|1|DA|A|453
5IT8|1|DA|A|454
5IT8|1|DA|C|455
5IT8|1|DA|C|456
5IT8|1|DA|A|457
5IT8|1|DA|G|458
5IT8|1|DA|U|459
5IT8|1|DA|A|460
5IT8|1|DA|C|461
*
5IT8|1|DA|G|468
5IT8|1|DA|G|469
5IT8|1|DA|A|470
5IT8|1|DA|A|471
5IT8|1|DA|A|472
5IT8|1|DA|G|473

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D3
50S ribosomal protein L34
Chain DE
50S ribosomal protein L4
Chain DR
50S ribosomal protein L20
Chain DU
50S ribosomal protein L23

Coloring options:


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