J3_5IT8_072
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5IT8|1|CA|U|2833, 5IT8|1|CA|A|2835, 5IT8|1|CA|U|2884, 5IT8|1|CA|G|2885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IT8_072 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1335
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5IT8|1|CA|G|2812
5IT8|1|CA|A|2813
5IT8|1|CA|A|2814
5IT8|1|CA|C|2815
*
5IT8|1|CA|G|2831
5IT8|1|CA|U|2832
5IT8|1|CA|U|2833
5IT8|1|CA|G|2834
5IT8|1|CA|A|2835
5IT8|1|CA|U|2836
*
5IT8|1|CA|A|2882
5IT8|1|CA|A|2883
5IT8|1|CA|U|2884
5IT8|1|CA|G|2885
5IT8|1|CA|A|2886
5IT8|1|CA|A|2887
5IT8|1|CA|C|2888
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C1
- 50S ribosomal protein L32
- Chain CD
- 50S ribosomal protein L3
- Chain CO
- 50S ribosomal protein L17
- Chain CT
- 50S ribosomal protein L22
Coloring options: