J3_5IT9_003

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT9_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.0894

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5IT9|1|2|A|760
5IT9|1|2|G|761
5IT9|1|2|A|762
5IT9|1|2|G|763
*
5IT9|1|2|C|773
5IT9|1|2|A|774
5IT9|1|2|G|775
*
5IT9|1|2|U|784
5IT9|1|2|C|785
5IT9|1|2|G|786
5IT9|1|2|A|787
5IT9|1|2|A|788
5IT9|1|2|U|789

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain J

Ribosomal protein uS4

Chain Y

Ribosomal protein eS24