J3_5IT9_009
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 5IT9|1|2|G|1443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IT9_009 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.2273
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5IT9|1|2|C|1214
5IT9|1|2|C|1215
5IT9|1|2|A|1216
5IT9|1|2|G|1217
5IT9|1|2|A|1218
5IT9|1|2|C|1219
*
5IT9|1|2|G|1262
5IT9|1|2|G|1263
5IT9|1|2|G|1264
5IT9|1|2|U|1265
5IT9|1|2|G|1266
*
5IT9|1|2|U|1440
5IT9|1|2|U|1441
5IT9|1|2|A|1442
5IT9|1|2|G|1443
5IT9|1|2|A|1444
5IT9|1|2|C|1445
5IT9|1|2|G|1446
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- Ribosomal protein eS10
- Chain M
- Ribosomal protein eS12
- Chain d
- Ribosomal protein eS29
- Chain f
- Ribosomal protein eS31
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