J3_5IT9_014
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 5IT9|1|2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IT9_014 not in the Motif Atlas
- Homologous match to J3_8C3A_083
- Geometric discrepancy: 0.0841
- The information below is about J3_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.2
- Basepair signature
- cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IT9|1|2|A|41
5IT9|1|2|G|42
5IT9|1|2|A|43
5IT9|1|2|U|44
5IT9|1|2|U|45
5IT9|1|2|A|46
5IT9|1|2|A|47
5IT9|1|2|G|48
*
5IT9|1|2|C|430
5IT9|1|2|G|431
5IT9|1|2|C|432
5IT9|1|2|G|433
5IT9|1|2|C|434
5IT9|1|2|A|435
5IT9|1|2|A|436
5IT9|1|2|A|437
5IT9|1|2|U|438
*
5IT9|1|2|A|463
5IT9|1|2|G|464
5IT9|1|2|U|465
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- Ribosomal protein uS4
- Chain X
- Ribosomal protein uS21
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