Motif J3_46317.2 Version J3_46317.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 1-16 | 3-14 | 4-15 | 7-15 | 8-9 | 8-11 | 9-10 | 12-13 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_6CZR_058 | 6CZR | 0.1219 | 3 | 1a | SSU rRNA | U | 355 | A | 356 | G | 357 | G | 358 | A | 359 | A | 360 | U | 361 | C | 362 | U | 363 | * | A | 389 | G | 390 | C | 391 | * | G | 47 | C | 48 | U | 50 | G | 53 | cWW | ncWW | cSW | ntWH | ncSH | cSW | cWW | cWW |
| 2 | J3_4LFB_014 | 4LFB | 0.0000 | 3 | A | SSU rRNA | U | 359 | A | 360 | G | 361 | G | 362 | A | 363 | A | 364 | U | 365 | C | 366 | U | 367 | * | A | 393 | G | 394 | C | 395 | * | G | 46 | C | 47 | U | 49 | G | 52 | cWW | cWW | cSW | tWH | cSW | cWW | cWW | |
| 3 | J3_5J7L_050 | 5J7L | 0.1106 | 3 | AA | SSU rRNA | G | 359 | G | 360 | G | 361 | G | 362 | A | 363 | A | 364 | U | 365 | A | 366 | U | 367 | * | A | 393 | G | 394 | C | 395 | * | G | 46 | C | 47 | U | 49 | C | 52 | cWW | cWW | cSW | tWH | cSW | cWW | cWW | |
| 4 | J3_8P9A_069 | 8P9A | 0.7969 | 4 | sR | SSU rRNA | C | 431 | G | 432 | C | 433 | G | 434 | C | 435 | A | 436 | A | 437 | A | 438 | U | 439 | * | A | 464 | G | 465 | U | 466 | * | A | 41 | G | 42 | U | 44 | G | 48 | cWW | cWW | cSW | cWW | cWW | |||
| 5 | J3_8C3A_083 | 8C3A | 0.7994 | 4 | CM | SSU rRNA | C | 429 | G | 430 | C | 431 | G | 432 | C | 433 | A | 434 | A | 435 | A | 436 | U | 437 | * | A | 462 | G | 463 | U | 464 | * | A | 41 | G | 42 | U | 44 | G | 48 | cWW | cWW | cSW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUAAG*UAGGAAUCU*AGC | 2 |
| AGAUUAAG*CGCGCAAAU*AGU | 2 |
| GCCUAAC*GGGGAAUAU*AGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUAA*AGGAAUC*G | 2 |
| GAUUAA*GCGCAAA*G | 2 |
| CCUAA*GGGAAUA*G | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.42 | Max 0.80
Coloring options: