J3_8C3A_083

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8C3A|1|CM|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

8C3A|1|CM|A|41
8C3A|1|CM|G|42
8C3A|1|CM|A|43
8C3A|1|CM|U|44
8C3A|1|CM|U|45
8C3A|1|CM|A|46
8C3A|1|CM|A|47
8C3A|1|CM|G|48
*
8C3A|1|CM|C|429
8C3A|1|CM|G|430
8C3A|1|CM|C|431
8C3A|1|CM|G|432
8C3A|1|CM|C|433
8C3A|1|CM|A|434
8C3A|1|CM|A|435
8C3A|1|CM|A|436
8C3A|1|CM|U|437
*
8C3A|1|CM|A|462
8C3A|1|CM|G|463
8C3A|1|CM|U|464

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)