J3_5IWA_003

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IWA_003 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.065

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5IWA|1|A|U|943
5IWA|1|A|G|944
5IWA|1|A|G|945
5IWA|1|A|A|946
*
5IWA|1|A|U|1235
5IWA|1|A|A|1236
5IWA|1|A|C|1237
*
5IWA|1|A|G|1337
5IWA|1|A|G|1338
5IWA|1|A|A|1339
5IWA|1|A|A|1340

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain M

30S ribosomal protein S13

Chain V

30S ribosomal protein Thx