J3_5J30_013

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5J30|1|QA|U|1240, 5J30|1|QA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J30_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.0898

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

5J30|1|QA|C|1237
5J30|1|QA|A|1238
5J30|1|QA|A|1239
5J30|1|QA|U|1240
5J30|1|QA|G|1241
*
5J30|1|QA|C|1296
5J30|1|QA|C|1297
5J30|1|QA|C|1298
5J30|1|QA|A|1299
5J30|1|QA|G|1300
5J30|1|QA|U|1301
5J30|1|QA|U|1302
5J30|1|QA|C|1303
*
5J30|1|QA|G|1334
5J30|1|QA|C|1335
5J30|1|QA|C|1336
5J30|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx