J3_5J30_033

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5J30|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J30_033 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0549

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5J30|1|XA|C|826
5J30|1|XA|U|827
5J30|1|XA|A|828
5J30|1|XA|G|829
*
5J30|1|XA|C|857
5J30|1|XA|G|858
5J30|1|XA|A|859
5J30|1|XA|A|860
5J30|1|XA|G|861
*
5J30|1|XA|C|868
5J30|1|XA|G|869
5J30|1|XA|U|870
5J30|1|XA|U|871
5J30|1|XA|A|872
5J30|1|XA|A|873
5J30|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8