J3_5J3C_058

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5J3C|1|QA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J3C_058 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.135

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5J3C|1|QA|C|990
5J3C|1|QA|U|991
5J3C|1|QA|U|992
5J3C|1|QA|G|993
5J3C|1|QA|A|994
5J3C|1|QA|C|995
5J3C|1|QA|A|996
5J3C|1|QA|U|997
*
5J3C|1|QA|A|1044
5J3C|1|QA|C|1045
5J3C|1|QA|A|1046
5J3C|1|QA|G|1047
*
5J3C|1|QA|C|1210
5J3C|1|QA|U|1211
5J3C|1|QA|U|1212
5J3C|1|QA|A|1213
5J3C|1|QA|C|1214
5J3C|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain QY

Peptide chain release factor 1

Chain YA

Large subunit ribosomal RNA; LSU rRNA